The freqparcoord Package for Multivariate Visualization

Recently my student Yingkang Xie and I have developed freqparcoord, a novel approach to the parallel coordinates method for multivariate data visualization.  Our approach:

  • Addresses the screen-clutter problem in parallel coordinates, by only plotting the “most typical” cases, meaning those with the highest estimated multivariate density values. This makes it easier to discern relations between variables.
  • Also allows plotting the “least typical” cases, i.e. those with the lowest density values, in order to find outliers.
  • Allows plotting only cases that are “local maxima” in terms of density, as a means of performing clustering.

The user has the option of specifying that the computation be done parallelized.  (See http://heather.cs.ucdavis.edu/paralleldatasci.pdf for a partial draft of my book, Parallel Computing for Data Science:  with Examples from R and Beyond,  to be published by Chapman & Hall later this year.  Comments welcome.) For a quick intro to freqparcoord, download from CRAN, and load into R.  Type ?freqparcoord and run the examples, making sure to read the comments. One of the examples, whose plot is shown below, involves baseball player data, courtesy of the UCLA Statistics Dept.  Here we’ve plotted the 5 most typical lines for each position.   We see that catchers tend to be shorter, heavier and older, while pitchers tend to be taller, lighter and younger. ItsAllHappeningAtTheZoo

5 thoughts on “The freqparcoord Package for Multivariate Visualization”

    1. Glad you like it, Larry. What some parallel coordinates packages do is to allow the user to interactively reorder the vertical axes. I believe we’ll be able to do that without recomputation, by utilizing the structure of the ggplot2 object. Good suggestion for the next version!

  1. Is the next to the last line of code in the brackets in the knndens function redundant?

    function (data, k)
    {
    dsts <- get.knn(data, k = k)$nn.dist
    hvec <- dsts[, k]
    if (any(hvec == 0))
    stop("duplicate data points, try larger k or jitter()")
    1/(hvec^ncol(data)) #"Volume" around x #Redundant?
    (k/nrow(data))/(hvec^ncol(data)) #(k/N)/(Volume around x)
    }

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